Marianna Rapsomaniki

 

Research Associate                                                                                                        

Cell Cycle Laboratory

University of Patras

Rio, Patras, 26505, Greece

email: rapsoman [at] upatras [dot] gr

Education

Research Interests: 

  • Computational / Systems Biology, Bioinformatics, Stochastic Hybrid Systems, Machine Learning and Data Mining

Projects:

  • easyFRAP: a software tool for analysis of FRAP data
  • Kinetic parameter Inference from FRAP experiments
  • Modeling of protein diffusion and binding using Stochastic Hybrid Systems
  • Modeling of DNA Replication and Re-replication

Honors and Awards:

  • 2014: Short-term Fellowship from the State Scholarships Foundation of Greece for a 3-month stay at Automatic Control Laboratory, ETH Zurich.
  • 2013: Erasmus LLP Placement travel Grant (European Mobility Program) for a 3-month stay at Automatic Control Laboratory, ETH Zurich.
  • 2011 - 2012: Swiss Government Excellence Scholarship, 1 year funding for a research stay at Automatic Control Laboratory, ETH Zurich

Peer-reviewed Publications (journals - conference proceedings):

  1. Rapsomaniki, Cinquemani, Giakoumakis, Kotsantis, Lygeros, Lygerou. (2014) Inference of protein kinetics by stochastic modeling and simulation of Fluorescence Recovery After Photobleaching experiments. Bioinformatics, btu619 (advance access).
  2. Symeonidou, Kotsantis, Roukos, Rapsomaniki, Grecco, Bastiaens, Taraviras, Lygerou. (2013) Multi-step loading of human Mini-Chromosome Maintenance Proteins in live human cells. J Biol. Chem.  288(50):35852-67
  3. Rapsomaniki, Kotsantis, Symeonidou, Giakoumakis, Taraviras and Lygerou (2012) easyFRAP: an interactive, easy-to-use tool for qualitative and quantitative analysis of FRAP data, Bioinformatics, 28(13):1800-1801
  4. Spyropoulou, Rapsomaniki, Theofilatos, Papadimitriou, Likothanassis, Tsakalidis and Mavroudi, (2012), Computational Methods and Algorithms for Mass Spectrometry Based Differential Proteomics: Recent Advances, Perspectives and Open Problems, Current Proteomics, 9(3): 143:157
  5. Rapsomaniki, Zerefos, Theofilatos, Likothanassis, Tsakalidis and Mavroudi, A Novel Pipeline Method for the Preprocessing of Mass Spectrometry Proteomics Data, Proceedings of the 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB2010), Corfu, Greece
  6. Theofilatos, Kleftogiannis, Rapsomaniki, Haidinis, Likothanassis, Tsakalidis and Mavroudi, A novel embedded pre-miRNA classification approach for the prediction of microRNA genes, Proceedings of the 10th IEEE International Conference on Information Technology and Applications in Biomedicine (ITAB2010), Corfu, Greece